Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.32□□□□□ -1.72
SCN4AP35499 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.32□□□□□ -1.72
SCN4AP35499 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.32□□□□□ -1.72
SCN4AP35499 RNU6-301P-201ENST00000384277 107 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 OR51A6P-201ENST00000418680 1004 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.32□□□□□ -1.72
SCN4AP35499 AC025750.2-201ENST00000442609 450 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 AC004069.2-201ENST00000505438 1114 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.32□□□□□ -1.72
SCN4AP35499 TRAV15-201ENST00000556680 249 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 AL360157.1-201ENST00000565962 87 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 OR1AB1P-201ENST00000585564 761 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.32□□□□□ -1.72
SCN4AP35499 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.32□□□□□ -1.72
SCN4AP35499 AL773545.4-201ENST00000637262 310 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 AL513478.4-201ENST00000641636 310 ntBASIC4.32□□□□□ -1.72
SCN4AP35499 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SCN4AP35499 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SCN4AP35499 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SCN4AP35499 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.31□□□□□ -1.72
SCN4AP35499 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SCN4AP35499 AC093719.1-202ENST00000392735 373 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.31□□□□□ -1.72
SCN4AP35499 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.31□□□□□ -1.72
SCN4AP35499 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.31□□□□□ -1.72
SCN4AP35499 BX119904.1-201ENST00000432026 348 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 AL645931.1-201ENST00000439737 410 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 AC010655.1-201ENST00000449336 292 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 RPL26P28-201ENST00000451325 435 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.31□□□□□ -1.72
SCN4AP35499 AC073522.1-201ENST00000483312 377 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 RPL31P61-201ENST00000496160 376 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 AC080014.1-201ENST00000496877 1201 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 RNA5SP341-201ENST00000516261 117 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.31□□□□□ -1.72
SCN4AP35499 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.31□□□□□ -1.72
SCN4AP35499 AC107294.1-201ENST00000609524 467 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 AC016590.3-201ENST00000611171 753 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 LINC00901.1-201ENST00000617252 152 ntBASIC4.31□□□□□ -1.72
SCN4AP35499 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC4.31□□□□□ -1.72
SCN4AP35499 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC4.31□□□□□ -1.72
SCN4AP35499 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.31□□□□□ -1.72
SCN4AP35499 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
SCN4AP35499 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SCN4AP35499 AL160175.1-201ENST00000428124 247 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.3□□□□□ -1.72
SCN4AP35499 AC114982.2-201ENST00000461396 358 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.3□□□□□ -1.72
SCN4AP35499 AP000255.1-201ENST00000610276 676 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.3□□□□□ -1.72
SCN4AP35499 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.3□□□□□ -1.72
SCN4AP35499 AC233263.6-201ENST00000631132 1963 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SCN4AP35499 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.3□□□□□ -1.72
SCN4AP35499 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
SCN4AP35499 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
SCN4AP35499 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SCN4AP35499 RNA5SP39-201ENST00000411245 120 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 COTL1P1-201ENST00000422309 375 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.3□□□□□ -1.72
SCN4AP35499 AC011742.1-201ENST00000431448 434 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.3□□□□□ -1.72
SCN4AP35499 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.3□□□□□ -1.72
SCN4AP35499 AC006480.1-201ENST00000449887 378 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 RPL27AP5-201ENST00000469428 449 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 AC109925.1-201ENST00000478069 331 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.3□□□□□ -1.72
SCN4AP35499 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.3□□□□□ -1.72
SCN4AP35499 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.3□□□□□ -1.72
SCN4AP35499 HIGD1AP3-201ENST00000515857 278 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.3□□□□□ -1.72
SCN4AP35499 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.3□□□□□ -1.72
SCN4AP35499 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SCN4AP35499 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
SCN4AP35499 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SCN4AP35499 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
SCN4AP35499 AP000542.2-201ENST00000623199 6179 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SCN4AP35499 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
SCN4AP35499 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.29□□□□□ -1.72
SCN4AP35499 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SCN4AP35499 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SCN4AP35499 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
SCN4AP35499 RNU6-233P-201ENST00000410845 141 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.29□□□□□ -1.72
SCN4AP35499 BX842559.1-201ENST00000419615 532 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.29□□□□□ -1.72
SCN4AP35499 AC008065.1-201ENST00000428525 348 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 RPL7P28-201ENST00000437739 740 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 CCDC75P1-201ENST00000469247 791 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.29□□□□□ -1.72
SCN4AP35499 AC011825.1-201ENST00000484967 388 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.29□□□□□ -1.72
SCN4AP35499 UBE2NP1-201ENST00000545592 458 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.29□□□□□ -1.72
SCN4AP35499 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.29□□□□□ -1.72
SCN4AP35499 AL133247.2-201ENST00000603236 482 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms