Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FGF7P4-201ENST00000509595 295 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 NANOGNBP2-201ENST00000544753 553 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 RPL27-207ENST00000590864 569 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AP001542.2-201ENST00000593141 364 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 IGLCOR22-2-201ENST00000605398 313 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 COX6CP4-201ENST00000605798 228 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 Z95327.3-201ENST00000610385 572 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AL592295.2-201ENST00000612578 206 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AL359880.1-201ENST00000621879 266 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 CASC19-206ENST00000641028 1430 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 AC104260.2-201ENST00000623551 3497 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 MTCO1P9-201ENST00000505577 1534 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 CR383658.2-201ENST00000547576 1525 ntBASIC6.3□□□□□ -1.4
CCDC39Q9UFE4 MRE11P1-201ENST00000464884 2127 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC066616.2-201ENST00000559334 1481 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 OR4K15-201ENST00000305051 1216 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RNU5F-7P-201ENST00000363696 115 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RNA5SP394-201ENST00000364216 119 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RNU6-707P-201ENST00000364647 95 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RNU6-738P-201ENST00000384531 106 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RNU6-297P-201ENST00000384636 107 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC007435.1-201ENST00000421086 415 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC069157.1-201ENST00000421749 137 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AL513185.2-201ENST00000425543 193 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC113412.1-201ENST00000425840 504 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RPL7AP49-201ENST00000429522 581 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RPL31P54-201ENST00000429803 370 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AL591438.1-201ENST00000433508 581 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC108059.2-201ENST00000434626 151 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC006335.2-201ENST00000437993 330 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RPL7P31-201ENST00000450192 724 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RAD23BP3-201ENST00000454157 1152 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC007537.2-201ENST00000472093 511 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RPS29P25-201ENST00000481709 171 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC091544.1-201ENST00000484702 348 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC009646.1-201ENST00000510455 318 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 BMS1P7-201ENST00000602440 1052 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC233280.2-201ENST00000603917 1070 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC099676.1-201ENST00000608886 657 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AL121890.2-201ENST00000617644 465 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AL713922.2-201ENST00000619384 716 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC087821.2-201ENST00000637086 450 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC114947.2-201ENST00000565748 2125 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 AC144833.1-201ENST00000567953 4089 ntBASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC39Q9UFE4 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC000374.1-201ENST00000434698 1745 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 SMG1P4-204ENST00000523028 4131 ntBASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
CCDC39Q9UFE4 AC093849.1-201ENST00000563631 2209 ntBASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms