Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC112206.1-201ENST00000468416 477 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MTATP6P22-201ENST00000507369 598 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MTCO2P32-201ENST00000514865 403 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 SNORA70.11-201ENST00000515987 138 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 RNU6-202P-201ENST00000515998 96 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 SNORA70.13-201ENST00000516116 138 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL512347.1-201ENST00000566420 503 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC008687.2-201ENST00000597865 520 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 VN1R92P-201ENST00000598511 928 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL355816.1-201ENST00000607951 118 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 RNA5SP439-201ENST00000617595 124 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AC090582.1-201ENST00000636321 199 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 ADAM24P-201ENST00000398655 2101 ntBASIC5.21□□□□□ -1.58
TDP1Q9NUW8 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.21□□□□□ -1.58
TDP1Q9NUW8 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC099654.2-201ENST00000433031 1980 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC016716.1-201ENST00000265882 708 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 OR1L6-202ENST00000373684 1044 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 VDAC2P1-201ENST00000399358 958 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 SNORA77-201ENST00000408716 125 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 Z99497.1-201ENST00000421282 135 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC006366.1-201ENST00000422002 759 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AL049610.1-201ENST00000423374 372 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AL354766.1-201ENST00000423396 542 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 KATNBL1P6-201ENST00000453433 915 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC091180.1-201ENST00000462104 372 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC109486.1-201ENST00000486833 374 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC091965.2-201ENST00000512324 613 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC027309.2-201ENST00000520566 192 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 SLC2A13P1-201ENST00000531560 322 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC092656.1-203ENST00000624134 423 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC120349.2-201ENST00000625002 298 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 AC092192.1-201ENST00000633154 1018 ntBASIC5.2□□□□□ -1.58
TDP1Q9NUW8 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
TDP1Q9NUW8 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
TDP1Q9NUW8 MAPK10-263ENST00000641052 4307 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms