Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Trim54Q9ERP3 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Gm15372-201ENSMUST00000120729 834 ntBASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim54Q9ERP3 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.86■□□□□ 0.45
Trim54Q9ERP3 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim54Q9ERP3 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Gm10052-201ENSMUST00000168019 960 ntBASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Gm7729-201ENSMUST00000050143 801 ntBASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim54Q9ERP3 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Gm13312-201ENSMUST00000119631 718 ntBASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Gm12644-201ENSMUST00000119935 606 ntBASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim54Q9ERP3 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim54Q9ERP3 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim54Q9ERP3 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Trim54Q9ERP3 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim54Q9ERP3 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Trim54Q9ERP3 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim54Q9ERP3 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
Trim54Q9ERP3 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
Trim54Q9ERP3 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.83■□□□□ 0.44
Trim54Q9ERP3 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim54Q9ERP3 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.83■□□□□ 0.44
Trim54Q9ERP3 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.83■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms