Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smc1aQ9CU62 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Smc1aQ9CU62 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Gm9103-201ENSMUST00000119371 405 ntBASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smc1aQ9CU62 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Gm7638-201ENSMUST00000121348 967 ntBASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Smc1aQ9CU62 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
Smc1aQ9CU62 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Gm24841-201ENSMUST00000158676 357 ntBASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Ank2-226ENSMUST00000189368 339 ntBASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Gm7791-201ENSMUST00000219066 539 ntBASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Smc1aQ9CU62 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smc1aQ9CU62 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smc1aQ9CU62 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smc1aQ9CU62 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Smc1aQ9CU62 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Smc1aQ9CU62 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Smc1aQ9CU62 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms