Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Gm7638-201ENSMUST00000121348 967 ntBASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Gm3375-201ENSMUST00000203929 796 ntBASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rnf111Q99ML9 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Gm17661-201ENSMUST00000170317 270 ntBASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rnf111Q99ML9 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Gm21814-202ENSMUST00000203277 873 ntBASIC16.04■□□□□ 0.16
Rnf111Q99ML9 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Gm9731-201ENSMUST00000209480 747 ntBASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Gm5417-201ENSMUST00000079706 384 ntBASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Rnf111Q99ML9 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Rnf111Q99ML9 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms