Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Gm4217-201ENSMUST00000182243 1002 ntBASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Gm27463-201ENSMUST00000183569 57 ntBASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Gm43072-201ENSMUST00000200283 1671 ntBASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Lsm1Q8VC85 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Actl10-202ENSMUST00000226583 1501 ntBASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Lsm1Q8VC85 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Lsm1Q8VC85 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Lsm1Q8VC85 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
Lsm1Q8VC85 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
Lsm1Q8VC85 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Lsm1Q8VC85 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Phf7-203ENSMUST00000226565 1971 ntBASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Lsm1Q8VC85 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms