Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Ptprs-211ENSMUST00000223859 5588 ntBASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ccdc9Q8VC31 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ccdc9Q8VC31 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ccdc9Q8VC31 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Ccdc9Q8VC31 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Gm44443-201ENSMUST00000204396 5633 ntBASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ccdc9Q8VC31 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc9Q8VC31 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC19.94■□□□□ 0.78
Ccdc9Q8VC31 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ccdc9Q8VC31 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms