Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Syne4Q8CII8 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Gm4995-201ENSMUST00000117247 432 ntBASIC18.71■□□□□ 0.59
Syne4Q8CII8 Gm13036-201ENSMUST00000117799 748 ntBASIC18.71■□□□□ 0.59
Syne4Q8CII8 Gm4459-201ENSMUST00000118750 468 ntBASIC18.71■□□□□ 0.59
Syne4Q8CII8 Gm14822-201ENSMUST00000122247 291 ntBASIC18.71■□□□□ 0.59
Syne4Q8CII8 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.71■□□□□ 0.59
Syne4Q8CII8 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Syne4Q8CII8 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Syne4Q8CII8 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Gm11780-201ENSMUST00000136880 516 ntBASIC18.7■□□□□ 0.58
Syne4Q8CII8 Gm12497-201ENSMUST00000138778 237 ntBASIC18.7■□□□□ 0.58
Syne4Q8CII8 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Gm37500-201ENSMUST00000192059 1443 ntBASIC18.7■□□□□ 0.58
Syne4Q8CII8 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Syne4Q8CII8 AC090659.1-201ENSMUST00000224334 768 ntBASIC18.7■□□□□ 0.58
Syne4Q8CII8 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Syne4Q8CII8 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Syne4Q8CII8 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.69■□□□□ 0.58
Syne4Q8CII8 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.69■□□□□ 0.58
Syne4Q8CII8 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC18.69■□□□□ 0.58
Syne4Q8CII8 Gm6184-201ENSMUST00000120403 1261 ntBASIC18.69■□□□□ 0.58
Syne4Q8CII8 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Syne4Q8CII8 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 AC131586.3-201ENSMUST00000228355 1367 ntBASIC18.68■□□□□ 0.58
Syne4Q8CII8 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.68■□□□□ 0.58
Syne4Q8CII8 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC18.68■□□□□ 0.58
Syne4Q8CII8 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Gm8655-201ENSMUST00000221159 852 ntBASIC18.68■□□□□ 0.58
Syne4Q8CII8 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Syne4Q8CII8 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC18.68■□□□□ 0.58
Syne4Q8CII8 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Syne4Q8CII8 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Syne4Q8CII8 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Syne4Q8CII8 Gm16499-203ENSMUST00000204633 2177 ntBASIC18.66■□□□□ 0.58
Syne4Q8CII8 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms