Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Cpsf4Q8BQZ5 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Gm37025-201ENSMUST00000195159 829 ntBASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Gm9731-201ENSMUST00000209480 747 ntBASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Cpsf4Q8BQZ5 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Gm18959-201ENSMUST00000208954 655 ntBASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Cpsf4Q8BQZ5 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.05■□□□□ 0.16
Cpsf4Q8BQZ5 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm36858-201ENSMUST00000194501 2391 ntBASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm17661-201ENSMUST00000170317 270 ntBASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm2274-201ENSMUST00000184539 609 ntBASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Il3ra-202ENSMUST00000223589 738 ntBASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm8839-201ENSMUST00000121279 1645 ntBASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cpsf4Q8BQZ5 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Cpsf4Q8BQZ5 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms