Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Gm5177-201ENSMUST00000183092 997 ntBASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Gm5745-201ENSMUST00000183748 313 ntBASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col27a1Q5QNQ9 Gm12892-201ENSMUST00000117367 1146 ntBASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 CT025535.1-201ENSMUST00000227172 491 ntBASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Gm9682-201ENSMUST00000197505 556 ntBASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col27a1Q5QNQ9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col27a1Q5QNQ9 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
Col27a1Q5QNQ9 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.14
Col27a1Q5QNQ9 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Gm43474-201ENSMUST00000196415 774 ntBASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Grk6-206ENSMUST00000224995 2971 ntBASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col27a1Q5QNQ9 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Gm11185-201ENSMUST00000117732 1007 ntBASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col27a1Q5QNQ9 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm45747-201ENSMUST00000212203 999 ntBASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col27a1Q5QNQ9 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms