Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddb1Q3U1J4 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Slc35b2-202ENSMUST00000223987 1766 ntBASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Gm14701-201ENSMUST00000117156 348 ntBASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddb1Q3U1J4 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Gm11873-201ENSMUST00000117877 1304 ntBASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddb1Q3U1J4 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ddb1Q3U1J4 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Gm11764-201ENSMUST00000120221 623 ntBASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Gm11025-201ENSMUST00000140773 466 ntBASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ddb1Q3U1J4 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Gm44945-201ENSMUST00000206764 1187 ntBASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Gm7229-201ENSMUST00000214719 1007 ntBASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Gm5186-201ENSMUST00000218781 920 ntBASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Ddx41-204ENSMUST00000224765 2199 ntBASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ddb1Q3U1J4 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Gm44872-201ENSMUST00000207864 420 ntBASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 AC159114.1-201ENSMUST00000220349 266 ntBASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ddb1Q3U1J4 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Gm5253-201ENSMUST00000187104 1025 ntBASIC20.91■□□□□ 0.94
Ddb1Q3U1J4 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms