Protein–RNA interactions for Protein: Q2QI47

Ush2A, Usherin, mousemouse

Predictions only

Length 5,193 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ush2AQ2QI47 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Ush2AQ2QI47 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Ush2AQ2QI47 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC8.82□□□□□ -1
Ush2AQ2QI47 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC8.82□□□□□ -1
Ush2AQ2QI47 Gm14719-201ENSMUST00000121891 340 ntBASIC8.82□□□□□ -1
Ush2AQ2QI47 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Ush2AQ2QI47 Gm45384-201ENSMUST00000210451 277 ntBASIC8.82□□□□□ -1
Ush2AQ2QI47 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC8.82□□□□□ -1
Ush2AQ2QI47 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC8.82□□□□□ -1
Ush2AQ2QI47 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC8.82□□□□□ -1
Ush2AQ2QI47 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC8.82□□□□□ -1
Ush2AQ2QI47 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC8.82□□□□□ -1
Ush2AQ2QI47 Gm38294-201ENSMUST00000192831 381 ntBASIC8.82□□□□□ -1
Ush2AQ2QI47 Gm4959-201ENSMUST00000197271 1044 ntBASIC8.82□□□□□ -1
Ush2AQ2QI47 Gm45167-201ENSMUST00000208007 322 ntBASIC8.82□□□□□ -1
Ush2AQ2QI47 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC8.82□□□□□ -1
Ush2AQ2QI47 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC8.82□□□□□ -1
Ush2AQ2QI47 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm25406-201ENSMUST00000157599 105 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm38241-201ENSMUST00000192641 898 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC8.81□□□□□ -1
Ush2AQ2QI47 Zfp264-201ENSMUST00000208656 1563 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm7901-201ENSMUST00000120430 1597 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Gm12176-201ENSMUST00000121420 875 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC8.81□□□□□ -1
Ush2AQ2QI47 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC8.81□□□□□ -1
Ush2AQ2QI47 Best4-ps-201ENSMUST00000129783 1380 ntBASIC8.8□□□□□ -1
Ush2AQ2QI47 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC8.8□□□□□ -1
Ush2AQ2QI47 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC8.8□□□□□ -1
Ush2AQ2QI47 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 AC124732.1-201ENSMUST00000221551 910 ntBASIC8.8□□□□□ -1
Ush2AQ2QI47 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC8.8□□□□□ -1
Ush2AQ2QI47 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC8.8□□□□□ -1
Ush2AQ2QI47 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC8.8□□□□□ -1
Ush2AQ2QI47 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Ush2AQ2QI47 AC131068.2-201ENSMUST00000226175 1453 ntBASIC8.8□□□□□ -1
Ush2AQ2QI47 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Gm7507-201ENSMUST00000183053 1008 ntBASIC8.8□□□□□ -1
Ush2AQ2QI47 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Ush2AQ2QI47 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC8.8□□□□□ -1
Ush2AQ2QI47 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Ush2AQ2QI47 Gm7488-201ENSMUST00000117148 684 ntBASIC8.8□□□□□ -1
Ush2AQ2QI47 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
Ush2AQ2QI47 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Gm9908-201ENSMUST00000211534 448 ntBASIC8.8□□□□□ -1
Ush2AQ2QI47 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC8.8□□□□□ -1
Ush2AQ2QI47 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC8.79□□□□□ -1
Ush2AQ2QI47 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
Ush2AQ2QI47 Gm8131-201ENSMUST00000213783 1570 ntBASIC8.79□□□□□ -1
Ush2AQ2QI47 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC8.79□□□□□ -1
Ush2AQ2QI47 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Ush2AQ2QI47 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC8.79□□□□□ -1
Ush2AQ2QI47 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC8.79□□□□□ -1
Ush2AQ2QI47 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC8.79□□□□□ -1
Ush2AQ2QI47 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
Ush2AQ2QI47 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
Ush2AQ2QI47 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC8.79□□□□□ -1
Ush2AQ2QI47 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC8.79□□□□□ -1
Ush2AQ2QI47 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC8.79□□□□□ -1
Ush2AQ2QI47 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms