Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Zcchc6-207ENSMUST00000225576 2499 ntBASIC14.27□□□□□ -0.13
Nkx3-1P97436 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Gm18195-201ENSMUST00000207604 706 ntBASIC14.26□□□□□ -0.13
Nkx3-1P97436 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Nkx3-1P97436 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.25□□□□□ -0.13
Nkx3-1P97436 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.25□□□□□ -0.13
Nkx3-1P97436 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC14.25□□□□□ -0.13
Nkx3-1P97436 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC14.25□□□□□ -0.13
Nkx3-1P97436 AC121598.2-201ENSMUST00000228376 2325 ntBASIC14.25□□□□□ -0.13
Nkx3-1P97436 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Nkx3-1P97436 Tfap2a-209ENSMUST00000225180 1828 ntBASIC14.25□□□□□ -0.13
Nkx3-1P97436 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Gfra2-202ENSMUST00000227633 1480 ntBASIC14.24□□□□□ -0.13
Nkx3-1P97436 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Nkx3-1P97436 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Nkx3-1P97436 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms