Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.49■□□□□ 0.39
Shmt1P50431 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Shmt1P50431 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC17.49■□□□□ 0.39
Shmt1P50431 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.48■□□□□ 0.39
Shmt1P50431 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.48■□□□□ 0.39
Shmt1P50431 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.48■□□□□ 0.39
Shmt1P50431 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.48■□□□□ 0.39
Shmt1P50431 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Shmt1P50431 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Shmt1P50431 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.47■□□□□ 0.39
Shmt1P50431 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Shmt1P50431 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Shmt1P50431 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.47■□□□□ 0.39
Shmt1P50431 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.47■□□□□ 0.39
Shmt1P50431 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.47■□□□□ 0.39
Shmt1P50431 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Shmt1P50431 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.47■□□□□ 0.39
Shmt1P50431 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.47■□□□□ 0.39
Shmt1P50431 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Shmt1P50431 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Shmt1P50431 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Shmt1P50431 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.46■□□□□ 0.39
Shmt1P50431 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Shmt1P50431 Gm17807-201ENSMUST00000186869 298 ntBASIC17.46■□□□□ 0.39
Shmt1P50431 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.46■□□□□ 0.39
Shmt1P50431 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.46■□□□□ 0.39
Shmt1P50431 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Shmt1P50431 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Shmt1P50431 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Shmt1P50431 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Shmt1P50431 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Shmt1P50431 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Shmt1P50431 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Shmt1P50431 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
Shmt1P50431 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.45■□□□□ 0.38
Shmt1P50431 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Shmt1P50431 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC17.45■□□□□ 0.38
Shmt1P50431 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.45■□□□□ 0.38
Shmt1P50431 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC17.45■□□□□ 0.38
Shmt1P50431 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.45■□□□□ 0.38
Shmt1P50431 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.45■□□□□ 0.38
Shmt1P50431 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Shmt1P50431 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.44■□□□□ 0.38
Shmt1P50431 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Shmt1P50431 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Gm28033-201ENSMUST00000184224 96 ntBASIC17.44■□□□□ 0.38
Shmt1P50431 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.44■□□□□ 0.38
Shmt1P50431 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Shmt1P50431 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Shmt1P50431 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.43■□□□□ 0.38
Shmt1P50431 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Shmt1P50431 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms