Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Rfx1P48377 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Rfx1P48377 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.81■□□□□ 0.76
Rfx1P48377 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.81■□□□□ 0.76
Rfx1P48377 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Rfx1P48377 Gm10602-201ENSMUST00000098239 609 ntBASIC19.81■□□□□ 0.76
Rfx1P48377 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Rfx1P48377 Gm16011-201ENSMUST00000121567 2662 ntBASIC19.81■□□□□ 0.76
Rfx1P48377 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Rfx1P48377 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Rfx1P48377 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
Rfx1P48377 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Gm17661-201ENSMUST00000170317 270 ntBASIC19.8■□□□□ 0.76
Rfx1P48377 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC19.8■□□□□ 0.76
Rfx1P48377 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Rfx1P48377 Gm27000-201ENSMUST00000182943 842 ntBASIC19.8■□□□□ 0.76
Rfx1P48377 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.8■□□□□ 0.76
Rfx1P48377 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.8■□□□□ 0.76
Rfx1P48377 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC19.8■□□□□ 0.76
Rfx1P48377 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Rfx1P48377 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.79■□□□□ 0.76
Rfx1P48377 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Rfx1P48377 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.79■□□□□ 0.76
Rfx1P48377 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.79■□□□□ 0.76
Rfx1P48377 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Rfx1P48377 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Rfx1P48377 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Rfx1P48377 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Rfx1P48377 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Rfx1P48377 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Rfx1P48377 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Rfx1P48377 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Rfx1P48377 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rfx1P48377 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Rfx1P48377 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms