Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC15.69■□□□□ 0.1
Cdx2P43241 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Cdx2P43241 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Gm15467-201ENSMUST00000120582 445 ntBASIC15.69■□□□□ 0.1
Cdx2P43241 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC15.69■□□□□ 0.1
Cdx2P43241 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC15.69■□□□□ 0.1
Cdx2P43241 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC15.69■□□□□ 0.1
Cdx2P43241 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Cdx2P43241 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Cdx2P43241 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Cdx2P43241 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Cdx2P43241 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC15.68■□□□□ 0.1
Cdx2P43241 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC15.68■□□□□ 0.1
Cdx2P43241 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Gm7507-201ENSMUST00000183053 1008 ntBASIC15.68■□□□□ 0.1
Cdx2P43241 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC15.68■□□□□ 0.1
Cdx2P43241 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC15.68■□□□□ 0.1
Cdx2P43241 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.68■□□□□ 0.1
Cdx2P43241 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC15.68■□□□□ 0.1
Cdx2P43241 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Cdx2P43241 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Cdx2P43241 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Cdx2P43241 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Gm37584-201ENSMUST00000193595 1290 ntBASIC15.67■□□□□ 0.1
Cdx2P43241 Gm8969-201ENSMUST00000199694 526 ntBASIC15.67■□□□□ 0.1
Cdx2P43241 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.67■□□□□ 0.1
Cdx2P43241 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC15.67■□□□□ 0.1
Cdx2P43241 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC15.67■□□□□ 0.1
Cdx2P43241 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Cdx2P43241 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Cdx2P43241 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Gm43808-201ENSMUST00000202534 2065 ntBASIC15.67■□□□□ 0.1
Cdx2P43241 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Cdx2P43241 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Cdx2P43241 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Fcho2-208ENSMUST00000224992 2964 ntBASIC15.66■□□□□ 0.1
Cdx2P43241 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Gm27702-201ENSMUST00000184512 56 ntBASIC15.66■□□□□ 0.1
Cdx2P43241 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC15.66■□□□□ 0.1
Cdx2P43241 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC15.66■□□□□ 0.1
Cdx2P43241 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Dmtn-207ENSMUST00000228001 2437 ntBASIC15.66■□□□□ 0.1
Cdx2P43241 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC15.66■□□□□ 0.1
Cdx2P43241 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Cdx2P43241 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx2P43241 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx2P43241 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx2P43241 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx2P43241 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Cdx2P43241 Gm12260-201ENSMUST00000122447 411 ntBASIC15.65■□□□□ 0.1
Cdx2P43241 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC15.65■□□□□ 0.1
Cdx2P43241 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx2P43241 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC15.65■□□□□ 0.1
Cdx2P43241 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx2P43241 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC15.65■□□□□ 0.1
Cdx2P43241 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Cdx2P43241 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
Cdx2P43241 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms