Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Lire1P11260 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Lire1P11260 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Lire1P11260 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lire1P11260 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Lire1P11260 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Lire1P11260 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Lire1P11260 AC166341.7-201ENSMUST00000221698 126 ntBASIC15.65■□□□□ 0.1
Lire1P11260 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Lire1P11260 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Lire1P11260 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Lire1P11260 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC15.65■□□□□ 0.1
Lire1P11260 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lire1P11260 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Lire1P11260 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.64■□□□□ 0.09
Lire1P11260 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Lire1P11260 Gm37374-201ENSMUST00000194954 1829 ntBASIC15.64■□□□□ 0.09
Lire1P11260 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC15.64■□□□□ 0.09
Lire1P11260 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Lire1P11260 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Lire1P11260 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC15.64■□□□□ 0.09
Lire1P11260 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
Lire1P11260 Gm7889-201ENSMUST00000185591 958 ntBASIC15.64■□□□□ 0.09
Lire1P11260 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC15.64■□□□□ 0.09
Lire1P11260 AC159205.6-201ENSMUST00000224935 887 ntBASIC15.64■□□□□ 0.09
Lire1P11260 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Lire1P11260 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lire1P11260 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC15.63■□□□□ 0.09
Lire1P11260 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC15.63■□□□□ 0.09
Lire1P11260 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC15.63■□□□□ 0.09
Lire1P11260 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lire1P11260 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms