Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC19.31■□□□□ 0.68
Col1a1P11087 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC19.31■□□□□ 0.68
Col1a1P11087 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Col1a1P11087 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.31■□□□□ 0.68
Col1a1P11087 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC19.3■□□□□ 0.68
Col1a1P11087 Gm26308-201ENSMUST00000157768 69 ntBASIC19.3■□□□□ 0.68
Col1a1P11087 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col1a1P11087 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col1a1P11087 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col1a1P11087 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col1a1P11087 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
Col1a1P11087 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col1a1P11087 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Col1a1P11087 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col1a1P11087 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.3■□□□□ 0.68
Col1a1P11087 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col1a1P11087 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC19.29■□□□□ 0.68
Col1a1P11087 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC19.29■□□□□ 0.68
Col1a1P11087 Gm36967-201ENSMUST00000193814 266 ntBASIC19.29■□□□□ 0.68
Col1a1P11087 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC19.29■□□□□ 0.68
Col1a1P11087 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC19.29■□□□□ 0.68
Col1a1P11087 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Col1a1P11087 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Col1a1P11087 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col1a1P11087 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
Col1a1P11087 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC19.28■□□□□ 0.68
Col1a1P11087 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC19.28■□□□□ 0.68
Col1a1P11087 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC19.28■□□□□ 0.68
Col1a1P11087 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC19.28■□□□□ 0.68
Col1a1P11087 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
Col1a1P11087 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC19.28■□□□□ 0.68
Col1a1P11087 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col1a1P11087 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Col1a1P11087 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Col1a1P11087 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col1a1P11087 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col1a1P11087 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col1a1P11087 Gm5648-201ENSMUST00000122244 1587 ntBASIC19.27■□□□□ 0.68
Col1a1P11087 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col1a1P11087 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col1a1P11087 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col1a1P11087 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col1a1P11087 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC19.27■□□□□ 0.67
Col1a1P11087 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col1a1P11087 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col1a1P11087 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Col1a1P11087 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Col1a1P11087 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col1a1P11087 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col1a1P11087 Gm11873-201ENSMUST00000117877 1304 ntBASIC19.26■□□□□ 0.67
Col1a1P11087 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Col1a1P11087 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Col1a1P11087 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col1a1P11087 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col1a1P11087 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col1a1P11087 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col1a1P11087 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC19.26■□□□□ 0.67
Col1a1P11087 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC19.26■□□□□ 0.67
Col1a1P11087 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC19.26■□□□□ 0.67
Col1a1P11087 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC19.26■□□□□ 0.67
Col1a1P11087 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC19.26■□□□□ 0.67
Col1a1P11087 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Col1a1P11087 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col1a1P11087 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col1a1P11087 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col1a1P11087 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms