Protein–RNA interactions for Protein: P02831

Hoxa3, Homeobox protein Hox-A3, mousemouse

Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa3P02831 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Hoxa3P02831 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Hoxa3P02831 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
Hoxa3P02831 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Hoxa3P02831 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Hoxa3P02831 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Hoxa3P02831 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC13.86□□□□□ -0.19
Hoxa3P02831 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
Hoxa3P02831 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC13.86□□□□□ -0.19
Hoxa3P02831 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Hoxa3P02831 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Gm42918-201ENSMUST00000199249 1580 ntBASIC13.86□□□□□ -0.19
Hoxa3P02831 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Hoxa3P02831 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Haglr-201ENSMUST00000100000 2085 ntBASIC13.85□□□□□ -0.19
Hoxa3P02831 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Hoxa3P02831 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Hoxa3P02831 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxa3P02831 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Hoxa3P02831 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Hoxa3P02831 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Hoxa3P02831 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxa3P02831 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxa3P02831 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Hoxa3P02831 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxa3P02831 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxa3P02831 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Hoxa3P02831 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC13.84□□□□□ -0.19
Hoxa3P02831 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms