Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Hmgb3O54879 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Hmgb3O54879 Gm10418-201ENSMUST00000100943 576 ntBASIC13.77□□□□□ -0.21
Hmgb3O54879 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
Hmgb3O54879 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Gm38285-201ENSMUST00000192928 922 ntBASIC13.77□□□□□ -0.21
Hmgb3O54879 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC13.77□□□□□ -0.21
Hmgb3O54879 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC13.77□□□□□ -0.21
Hmgb3O54879 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.77□□□□□ -0.21
Hmgb3O54879 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Hmgb3O54879 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Gm13509-201ENSMUST00000119733 1308 ntBASIC13.76□□□□□ -0.21
Hmgb3O54879 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC13.76□□□□□ -0.21
Hmgb3O54879 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC13.76□□□□□ -0.21
Hmgb3O54879 Gm13401-201ENSMUST00000117074 291 ntBASIC13.76□□□□□ -0.21
Hmgb3O54879 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Gm7514-201ENSMUST00000209475 934 ntBASIC13.76□□□□□ -0.21
Hmgb3O54879 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Hmgb3O54879 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Hmgb3O54879 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Hmgb3O54879 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC13.75□□□□□ -0.21
Hmgb3O54879 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC13.75□□□□□ -0.21
Hmgb3O54879 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Hmgb3O54879 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC13.75□□□□□ -0.21
Hmgb3O54879 Gm2011-201ENSMUST00000203124 1263 ntBASIC13.75□□□□□ -0.21
Hmgb3O54879 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Hmgb3O54879 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC13.75□□□□□ -0.21
Hmgb3O54879 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Hmgb3O54879 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC13.74□□□□□ -0.21
Hmgb3O54879 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Hmgb3O54879 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms