Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Gm13148-201ENSMUST00000118892 745 ntBASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Gm15375-201ENSMUST00000119510 849 ntBASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Gm5408-201ENSMUST00000197998 747 ntBASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Gm26571-201ENSMUST00000181399 666 ntBASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trav11A0A0B4J1J9 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Mir5133-201ENSMUST00000174955 77 ntBASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Gm42569-201ENSMUST00000200539 472 ntBASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Gm44672-201ENSMUST00000206944 1098 ntBASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Gm4968-201ENSMUST00000071458 858 ntBASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trav11A0A0B4J1J9 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Trav11A0A0B4J1J9 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.59
Trav11A0A0B4J1J9 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Trav11A0A0B4J1J9 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms