Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Trbv3A0A0A6YYE2 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Gm10138-203ENSMUST00000206952 366 ntBASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Mtag2-201ENSMUST00000058665 714 ntBASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Trbv3A0A0A6YYE2 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Trbv3A0A0A6YYE2 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Gm42473-201ENSMUST00000201056 2291 ntBASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Gm6365-201ENSMUST00000054711 744 ntBASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Trbv3A0A0A6YYE2 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trbv3A0A0A6YYE2 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
Trbv3A0A0A6YYE2 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC12.77□□□□□ -0.36
Trbv3A0A0A6YYE2 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Trbv3A0A0A6YYE2 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Trbv3A0A0A6YYE2 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms