Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS28Q9UK41 OR4K15-201ENST00000305051 1216 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 SNORA56-201ENST00000383966 129 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 SNORA70F-201ENST00000384142 135 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 SNORD96B-201ENST00000386148 79 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 RNA5SP372-201ENST00000390836 115 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 RNA5SP332-201ENST00000391063 115 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 RNA5SP397-201ENST00000391323 118 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 GLULP6-201ENST00000399502 913 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AL603865.2-201ENST00000401679 213 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 RPS3AP23-201ENST00000401762 784 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 RN7SKP216-201ENST00000411050 312 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC009237.10-201ENST00000414112 510 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 NUP35P2-201ENST00000416748 943 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC004448.2-201ENST00000422360 586 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 RPL7P57-201ENST00000423238 740 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC005008.1-201ENST00000456151 612 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 NAP1L1P3-201ENST00000462291 880 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 MTND4LP2-201ENST00000502312 285 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 HIGD1AP6-201ENST00000521833 279 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
VPS28Q9UK41 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 DHX40P1-201ENST00000588725 1412 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC008687.2-201ENST00000597865 520 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AL133338.2-201ENST00000604292 736 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC004232.3-201ENST00000622977 525 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 AC009951.1-201ENST00000623674 2614 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 LINC01355-201ENST00000566551 5444 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 MTND4P8-201ENST00000514997 1362 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.76□□□□□ -1.65
VPS28Q9UK41 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
VPS28Q9UK41 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.76□□□□□ -1.65
VPS28Q9UK41 CASC19-261ENST00000641853 1638 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 SGO1P1-201ENST00000603525 1447 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 SNORD113.2-201ENST00000364166 89 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 MIR195-201ENST00000385194 87 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 MIR16-1-201ENST00000385271 89 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 AL080315.1-201ENST00000406055 466 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 TPT1P13-201ENST00000449760 499 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 RPS20P21-201ENST00000466859 343 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 PRDX3P4-201ENST00000470828 747 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 RN7SL459P-201ENST00000481078 302 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC091860.1-201ENST00000505723 432 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC069306.1-201ENST00000507006 843 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
VPS28Q9UK41 RN7SKP92-201ENST00000517266 244 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 GSTP1P1-201ENST00000548078 319 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AP005119.2-201ENST00000579735 1105 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 RN7SL176P-201ENST00000580352 264 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC002487.1-201ENST00000604565 994 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AP004247.3-201ENST00000608682 624 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.75□□□□□ -1.65
VPS28Q9UK41 AC005086.4-201ENST00000623065 213 ntBASIC4.75□□□□□ -1.65
VPS28Q9UK41 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms