Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 MTND4P31-201ENST00000425607 1343 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 IL6STP1-201ENST00000346911 1020 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 RNU1-20P-201ENST00000363314 162 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 RNU6-236P-201ENST00000363886 106 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AL590290.1-201ENST00000405336 380 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AL512430.2-201ENST00000406786 339 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 RNU2-6P-201ENST00000411404 190 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 RPS7P9-201ENST00000414704 586 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 MTND4P3-201ENST00000417829 541 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 GTF2IP2-201ENST00000424290 697 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 RPL21P43-201ENST00000425440 472 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AL360081.1-201ENST00000428299 555 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 RPS7P5-201ENST00000441482 581 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC104651.2-201ENST00000447549 528 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 OFD1P3Y-201ENST00000453312 783 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC005008.1-201ENST00000456151 612 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 PRDX3P4-201ENST00000470828 747 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 IGLV3-26-201ENST00000520756 302 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 OR5AZ1P-201ENST00000527448 943 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 MIR4700-201ENST00000578311 74 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC115085.1-201ENST00000588924 229 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 PSMA6P4-201ENST00000603247 718 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC106052.1-201ENST00000608029 497 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 PART1_2.1-201ENST00000612397 250 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 VN1R7P-201ENST00000619242 903 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC004232.3-201ENST00000622977 525 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AC116563.2-201ENST00000624751 535 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 MAPK10-304ENST00000641341 3984 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 AL391684.1-202ENST00000641293 1636 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 AL592182.3-201ENST00000642132 3304 ntBASIC4.01□□□□□ -1.77
NKX3-1Q99801 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
NKX3-1Q99801 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
NKX3-1Q99801 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4□□□□□ -1.77
NKX3-1Q99801 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4□□□□□ -1.77
NKX3-1Q99801 OR56B2P-201ENST00000317102 954 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 RN7SKP115-201ENST00000363177 317 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 RNA5SP28-201ENST00000363841 119 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 SNORA11C-201ENST00000408532 129 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 CEACAMP8-201ENST00000413902 580 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4□□□□□ -1.77
NKX3-1Q99801 LIPT1P1-201ENST00000415870 1186 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4□□□□□ -1.77
NKX3-1Q99801 DNAJA1P1-201ENST00000425106 1187 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 MTCYBP15-201ENST00000433123 1127 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AL049745.1-201ENST00000433953 286 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4□□□□□ -1.77
NKX3-1Q99801 RPL7P16-201ENST00000479738 738 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC093720.1-201ENST00000505681 714 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4□□□□□ -1.77
NKX3-1Q99801 RNA5SP446-201ENST00000515955 82 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4□□□□□ -1.77
NKX3-1Q99801 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4□□□□□ -1.77
NKX3-1Q99801 AC021006.3-201ENST00000530771 192 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4□□□□□ -1.77
NKX3-1Q99801 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4□□□□□ -1.77
NKX3-1Q99801 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4□□□□□ -1.77
NKX3-1Q99801 NIFKP8-201ENST00000560500 874 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 ATP5J2P6-201ENST00000565203 266 ntBASIC4□□□□□ -1.77
NKX3-1Q99801 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 379.5 ms