Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
VPS35Q96QK1 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AL031985.3-201ENST00000565390 2449 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC126755.2-208ENST00000327792 462 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC138969.1-213ENST00000331436 462 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 RNA5SP366-201ENST00000365454 123 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 RHOT1P2-201ENST00000366423 333 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 RNA5SP39-201ENST00000411245 120 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 RBMY1KP-201ENST00000423480 476 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 CHIAP3-201ENST00000423668 1133 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 CEACAMP1-201ENST00000434624 1035 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC073143.1-201ENST00000436316 395 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AL451050.1-201ENST00000450126 415 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 ABCF2P2-201ENST00000450549 296 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC009963.2-201ENST00000453431 138 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 RPL23AP81-201ENST00000455252 467 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 HIGD1AP5-201ENST00000529959 259 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AL109766.1-201ENST00000555080 552 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 MTND6P33-201ENST00000571794 183 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 SUMO2P14-201ENST00000604488 293 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC007423.1-201ENST00000605009 627 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC114781.5-201ENST00000615297 108 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC019278.1-201ENST00000623516 479 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC011944.2-201ENST00000624440 683 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AL158163.1-201ENST00000603915 1649 ntBASIC4.27□□□□□ -1.73
VPS35Q96QK1 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
VPS35Q96QK1 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS35Q96QK1 AC008725.1-201ENST00000605123 2263 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC016588.2-201ENST00000632484 3021 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 RNU1-132P-201ENST00000364300 164 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AL391219.1-201ENST00000422570 483 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 BX119904.1-201ENST00000432026 348 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 ZFAND6P1-201ENST00000434138 605 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AL031663.1-201ENST00000437445 219 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 NDUFA5P9-201ENST00000472609 340 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 OR52A4P-202ENST00000481634 799 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC093663.2-201ENST00000484625 313 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC025445.1-201ENST00000502728 300 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 VTA1P2-201ENST00000520205 911 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 PHBP17-201ENST00000528576 541 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC100770.1-201ENST00000532310 322 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC006064.5-201ENST00000541782 248 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 CKS1BP1-201ENST00000555221 240 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC015849.2-201ENST00000605738 409 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC003001.2-201ENST00000616294 831 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC009318.3-201ENST00000616916 503 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 AC023509.5-201ENST00000617434 807 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS35Q96QK1 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS35Q96QK1 MIR6715B-201ENST00000637172 77 ntBASIC4.26□□□□□ -1.73
VPS35Q96QK1 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms