Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf1Q9EPU0 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf1Q9EPU0 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Upf1Q9EPU0 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.82■□□□□ 0.6
Upf1Q9EPU0 Golph3-205ENSMUST00000228671 2842 ntBASIC18.82■□□□□ 0.6
Upf1Q9EPU0 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 AC154767.3-201ENSMUST00000225150 1342 ntBASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Gm13597-201ENSMUST00000121239 375 ntBASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Gm25406-201ENSMUST00000157599 105 ntBASIC18.81■□□□□ 0.6
Upf1Q9EPU0 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Gm5628-201ENSMUST00000222318 1049 ntBASIC18.81■□□□□ 0.6
Upf1Q9EPU0 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Ddx41-204ENSMUST00000224765 2199 ntBASIC18.81■□□□□ 0.6
Upf1Q9EPU0 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Upf1Q9EPU0 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC18.79■□□□□ 0.6
Upf1Q9EPU0 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Upf1Q9EPU0 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Gm6226-201ENSMUST00000117765 1146 ntBASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Upf1Q9EPU0 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Gm9794-201ENSMUST00000202370 423 ntBASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms