Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Vps28Q9D1C8 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.02■□□□□ 0.31
Vps28Q9D1C8 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.02■□□□□ 0.31
Vps28Q9D1C8 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Vps28Q9D1C8 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Vps28Q9D1C8 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Vps28Q9D1C8 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Gm33142-201ENSMUST00000193913 867 ntBASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Vps28Q9D1C8 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Vps28Q9D1C8 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Vps28Q9D1C8 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17■□□□□ 0.31
Vps28Q9D1C8 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Vps28Q9D1C8 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 Gm11336-201ENSMUST00000118168 334 ntBASIC17■□□□□ 0.31
Vps28Q9D1C8 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17■□□□□ 0.31
Vps28Q9D1C8 Gm7367-201ENSMUST00000057611 492 ntBASIC17■□□□□ 0.31
Vps28Q9D1C8 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Vps28Q9D1C8 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Vps28Q9D1C8 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17■□□□□ 0.31
Vps28Q9D1C8 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Gm11860-201ENSMUST00000122346 1010 ntBASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Vps28Q9D1C8 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Gm29518-201ENSMUST00000190858 372 ntBASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Gm21362-201ENSMUST00000194272 928 ntBASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Vps28Q9D1C8 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms