Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Gm37055-201ENSMUST00000191866 133 ntBASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Gm30025-201ENSMUST00000218555 728 ntBASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim11Q99PQ2 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trim11Q99PQ2 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trim11Q99PQ2 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trim11Q99PQ2 AC154231.1-201ENSMUST00000220564 2175 ntBASIC18.89■□□□□ 0.62
Trim11Q99PQ2 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Gm13186-201ENSMUST00000118031 316 ntBASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Gm20628-201ENSMUST00000177363 3215 ntBASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim11Q99PQ2 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Gm9484-201ENSMUST00000195892 1159 ntBASIC18.88■□□□□ 0.61
Trim11Q99PQ2 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim11Q99PQ2 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Gm11539-201ENSMUST00000119837 557 ntBASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Gm2274-201ENSMUST00000184539 609 ntBASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.87■□□□□ 0.61
Trim11Q99PQ2 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim11Q99PQ2 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.86■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms