Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Gm15173-201ENSMUST00000122049 433 ntBASIC17.49■□□□□ 0.39
Clp1Q99LI9 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.49■□□□□ 0.39
Clp1Q99LI9 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.49■□□□□ 0.39
Clp1Q99LI9 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.49■□□□□ 0.39
Clp1Q99LI9 AV026068-213ENSMUST00000223675 1171 ntBASIC17.49■□□□□ 0.39
Clp1Q99LI9 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.49■□□□□ 0.39
Clp1Q99LI9 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC17.48■□□□□ 0.39
Clp1Q99LI9 Gm6736-201ENSMUST00000166583 948 ntBASIC17.48■□□□□ 0.39
Clp1Q99LI9 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.48■□□□□ 0.39
Clp1Q99LI9 AC154222.1-201ENSMUST00000223882 475 ntBASIC17.48■□□□□ 0.39
Clp1Q99LI9 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Gm15590-201ENSMUST00000078419 552 ntBASIC17.48■□□□□ 0.39
Clp1Q99LI9 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Clp1Q99LI9 Gm10461-201ENSMUST00000202073 4786 ntBASIC17.47■□□□□ 0.39
Clp1Q99LI9 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Clp1Q99LI9 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Clp1Q99LI9 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Clp1Q99LI9 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.47■□□□□ 0.39
Clp1Q99LI9 Gm2756-201ENSMUST00000195851 400 ntBASIC17.47■□□□□ 0.39
Clp1Q99LI9 Gm6089-201ENSMUST00000197666 938 ntBASIC17.47■□□□□ 0.39
Clp1Q99LI9 Gm8969-201ENSMUST00000199694 526 ntBASIC17.47■□□□□ 0.39
Clp1Q99LI9 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Clp1Q99LI9 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Clp1Q99LI9 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Clp1Q99LI9 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Clp1Q99LI9 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Gm12497-201ENSMUST00000138778 237 ntBASIC17.46■□□□□ 0.39
Clp1Q99LI9 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Clp1Q99LI9 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Gm6550-201ENSMUST00000187574 993 ntBASIC17.46■□□□□ 0.39
Clp1Q99LI9 Gm43575-201ENSMUST00000196420 516 ntBASIC17.46■□□□□ 0.39
Clp1Q99LI9 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Clp1Q99LI9 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Clp1Q99LI9 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.45■□□□□ 0.38
Clp1Q99LI9 Gm14140-201ENSMUST00000119999 995 ntBASIC17.45■□□□□ 0.38
Clp1Q99LI9 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.45■□□□□ 0.38
Clp1Q99LI9 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.45■□□□□ 0.38
Clp1Q99LI9 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Clp1Q99LI9 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clp1Q99LI9 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clp1Q99LI9 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Clp1Q99LI9 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clp1Q99LI9 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Clp1Q99LI9 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Clp1Q99LI9 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC17.44■□□□□ 0.38
Clp1Q99LI9 Gm11780-201ENSMUST00000136880 516 ntBASIC17.44■□□□□ 0.38
Clp1Q99LI9 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Clp1Q99LI9 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms