Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Lsm1Q8VC85 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Gfra2-202ENSMUST00000227633 1480 ntBASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Lsm1Q8VC85 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Mir5122-201ENSMUST00000175004 89 ntBASIC15.88■□□□□ 0.13
Lsm1Q8VC85 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC15.88■□□□□ 0.13
Lsm1Q8VC85 AC115863.1-201ENSMUST00000214815 1813 ntBASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Lsm1Q8VC85 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Lsm1Q8VC85 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Gm13186-201ENSMUST00000118031 316 ntBASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Gm43353-201ENSMUST00000199224 1295 ntBASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Lsm1Q8VC85 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms