Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Gm28033-201ENSMUST00000184224 96 ntBASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Gm5587-201ENSMUST00000206270 674 ntBASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ushbp1Q8R370 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ushbp1Q8R370 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Gm7370-201ENSMUST00000219471 767 ntBASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ushbp1Q8R370 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Gm17807-201ENSMUST00000186869 298 ntBASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Gm29518-201ENSMUST00000190858 372 ntBASIC18.55■□□□□ 0.56
Ushbp1Q8R370 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ushbp1Q8R370 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 AC133598.3-202ENSMUST00000224219 531 ntBASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ushbp1Q8R370 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ushbp1Q8R370 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms