Protein–RNA interactions for Protein: Q8K4L0

Ddx54, ATP-dependent RNA helicase DDX54, mousemouse

Known RBP Predictions only

Length 874 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx54Q8K4L0 Gm6627-201ENSMUST00000218299 2386 ntBASIC21.68■■□□□ 1.06
Ddx54Q8K4L0 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Gm45203-201ENSMUST00000206384 1831 ntBASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Gm8396-201ENSMUST00000057361 823 ntBASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Ddx54Q8K4L0 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Gm5837-201ENSMUST00000191844 1369 ntBASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Gm17271-201ENSMUST00000165535 355 ntBASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Gm37171-201ENSMUST00000192636 1185 ntBASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Gm44945-201ENSMUST00000206764 1187 ntBASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Ddx54Q8K4L0 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 AC157650.3-201ENSMUST00000225058 1476 ntBASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC21.65■■□□□ 1.06
Ddx54Q8K4L0 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
Ddx54Q8K4L0 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 AC159106.1-201ENSMUST00000224421 690 ntBASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Ddx54Q8K4L0 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Ddx54Q8K4L0 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Gm11873-201ENSMUST00000117877 1304 ntBASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 AA543401-201ENSMUST00000164248 1269 ntBASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Ddx54Q8K4L0 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms