Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Brf1Q8CFK2 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Brf1Q8CFK2 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Gm11355-201ENSMUST00000121120 306 ntBASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Haglr-201ENSMUST00000100000 2085 ntBASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Brf1Q8CFK2 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Brf1Q8CFK2 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Brf1Q8CFK2 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Brf1Q8CFK2 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Brf1Q8CFK2 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 AC122351.1-201ENSMUST00000220467 126 ntBASIC20■□□□□ 0.79
Brf1Q8CFK2 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Brf1Q8CFK2 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC20■□□□□ 0.79
Brf1Q8CFK2 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC20■□□□□ 0.79
Brf1Q8CFK2 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC20■□□□□ 0.79
Brf1Q8CFK2 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC20■□□□□ 0.79
Brf1Q8CFK2 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Brf1Q8CFK2 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms