Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Usp40Q8BWR4 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.23
Usp40Q8BWR4 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.23
Usp40Q8BWR4 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Usp40Q8BWR4 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Gm6376-201ENSMUST00000209407 580 ntBASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 AC114585.2-202ENSMUST00000228094 426 ntBASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Usp40Q8BWR4 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Gm7862-201ENSMUST00000121461 292 ntBASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Gm18195-201ENSMUST00000207604 706 ntBASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Usp40Q8BWR4 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Gm25745-201ENSMUST00000174945 133 ntBASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Gm43514-201ENSMUST00000198852 424 ntBASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
Usp40Q8BWR4 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Gm18733-201ENSMUST00000173950 856 ntBASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Gm36967-201ENSMUST00000193814 266 ntBASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 AC127349.1-201ENSMUST00000224590 266 ntBASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Usp40Q8BWR4 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Gm9449-201ENSMUST00000207265 1011 ntBASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Usp40Q8BWR4 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Gm45606-201ENSMUST00000209836 2795 ntBASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Gm7507-201ENSMUST00000183053 1008 ntBASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Gm11841-201ENSMUST00000117060 1963 ntBASIC22.65■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms