Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Gm27742-201ENSMUST00000184667 60 ntBASIC19.56■□□□□ 0.72
Trim56Q80VI1 Ank2-226ENSMUST00000189368 339 ntBASIC19.56■□□□□ 0.72
Trim56Q80VI1 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.56■□□□□ 0.72
Trim56Q80VI1 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Gm14859-201ENSMUST00000117752 357 ntBASIC19.55■□□□□ 0.72
Trim56Q80VI1 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim56Q80VI1 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 AC125350.1-201ENSMUST00000225115 903 ntBASIC19.54■□□□□ 0.72
Trim56Q80VI1 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim56Q80VI1 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Otx2os1-206ENSMUST00000228153 787 ntBASIC19.53■□□□□ 0.72
Trim56Q80VI1 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim56Q80VI1 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trim56Q80VI1 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim56Q80VI1 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.52■□□□□ 0.71
Trim56Q80VI1 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim56Q80VI1 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC19.51■□□□□ 0.71
Trim56Q80VI1 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms