Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Sh3rf1Q69ZI1 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
Sh3rf1Q69ZI1 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Sh3rf1Q69ZI1 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Sh3rf1Q69ZI1 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Sh3rf1Q69ZI1 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Sh3rf1Q69ZI1 Gm10517-202ENSMUST00000192970 758 ntBASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms