Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Six4Q61321 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.75■□□□□ 0.27
Six4Q61321 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six4Q61321 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Six4Q61321 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Six4Q61321 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Six4Q61321 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.75■□□□□ 0.27
Six4Q61321 Zkscan4-202ENSMUST00000225845 1506 ntBASIC16.75■□□□□ 0.27
Six4Q61321 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Six4Q61321 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.74■□□□□ 0.27
Six4Q61321 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Six4Q61321 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.74■□□□□ 0.27
Six4Q61321 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Six4Q61321 Gm7977-201ENSMUST00000193787 748 ntBASIC16.74■□□□□ 0.27
Six4Q61321 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
Six4Q61321 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Six4Q61321 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.74■□□□□ 0.27
Six4Q61321 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Six4Q61321 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Haglr-201ENSMUST00000100000 2085 ntBASIC16.74■□□□□ 0.27
Six4Q61321 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Six4Q61321 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Six4Q61321 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Six4Q61321 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC16.73■□□□□ 0.27
Six4Q61321 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
Six4Q61321 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Six4Q61321 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC16.73■□□□□ 0.27
Six4Q61321 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Six4Q61321 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC16.73■□□□□ 0.27
Six4Q61321 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Six4Q61321 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC16.72■□□□□ 0.27
Six4Q61321 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Six4Q61321 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Six4Q61321 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC16.72■□□□□ 0.27
Six4Q61321 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.72■□□□□ 0.27
Six4Q61321 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Six4Q61321 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC16.72■□□□□ 0.27
Six4Q61321 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Six4Q61321 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
Six4Q61321 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.71■□□□□ 0.27
Six4Q61321 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Six4Q61321 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
Six4Q61321 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Six4Q61321 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Six4Q61321 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Six4Q61321 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Six4Q61321 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Six4Q61321 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.71■□□□□ 0.26
Six4Q61321 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
Six4Q61321 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Six4Q61321 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Six4Q61321 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 11.1 ms