Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Col11a1Q61245 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col11a1Q61245 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col11a1Q61245 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col11a1Q61245 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.55
Col11a1Q61245 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col11a1Q61245 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
Col11a1Q61245 Gm13597-201ENSMUST00000121239 375 ntBASIC18.51■□□□□ 0.55
Col11a1Q61245 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC18.51■□□□□ 0.55
Col11a1Q61245 Gm27300-201ENSMUST00000184085 97 ntBASIC18.51■□□□□ 0.55
Col11a1Q61245 Gm27335-201ENSMUST00000184758 97 ntBASIC18.51■□□□□ 0.55
Col11a1Q61245 Gm37171-201ENSMUST00000192636 1185 ntBASIC18.51■□□□□ 0.55
Col11a1Q61245 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.51■□□□□ 0.55
Col11a1Q61245 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Col11a1Q61245 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Col11a1Q61245 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.51■□□□□ 0.55
Col11a1Q61245 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Col11a1Q61245 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Col11a1Q61245 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Col11a1Q61245 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col11a1Q61245 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.5■□□□□ 0.55
Col11a1Q61245 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC18.5■□□□□ 0.55
Col11a1Q61245 Mir6404-201ENSMUST00000183699 94 ntBASIC18.5■□□□□ 0.55
Col11a1Q61245 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC18.5■□□□□ 0.55
Col11a1Q61245 Gm44872-201ENSMUST00000207864 420 ntBASIC18.5■□□□□ 0.55
Col11a1Q61245 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.5■□□□□ 0.55
Col11a1Q61245 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col11a1Q61245 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC18.49■□□□□ 0.55
Col11a1Q61245 Gm13616-201ENSMUST00000120600 222 ntBASIC18.49■□□□□ 0.55
Col11a1Q61245 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Col11a1Q61245 AC139382.1-201ENSMUST00000221402 498 ntBASIC18.49■□□□□ 0.55
Col11a1Q61245 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Col11a1Q61245 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Col11a1Q61245 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.49■□□□□ 0.55
Col11a1Q61245 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC18.49■□□□□ 0.55
Col11a1Q61245 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC18.49■□□□□ 0.55
Col11a1Q61245 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col11a1Q61245 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col11a1Q61245 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col11a1Q61245 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Col11a1Q61245 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col11a1Q61245 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col11a1Q61245 Gm17968-201ENSMUST00000194902 784 ntBASIC18.48■□□□□ 0.55
Col11a1Q61245 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC18.48■□□□□ 0.55
Col11a1Q61245 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC18.48■□□□□ 0.55
Col11a1Q61245 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.48■□□□□ 0.55
Col11a1Q61245 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col11a1Q61245 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Col11a1Q61245 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Col11a1Q61245 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.47■□□□□ 0.55
Col11a1Q61245 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Col11a1Q61245 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Col11a1Q61245 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Col11a1Q61245 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col11a1Q61245 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col11a1Q61245 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col11a1Q61245 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Col11a1Q61245 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col11a1Q61245 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC18.46■□□□□ 0.55
Col11a1Q61245 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col11a1Q61245 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC18.46■□□□□ 0.55
Col11a1Q61245 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.46■□□□□ 0.55
Col11a1Q61245 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms