Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC20.06■□□□□ 0.8
Ubr3Q5U430 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubr3Q5U430 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubr3Q5U430 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubr3Q5U430 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ubr3Q5U430 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.05■□□□□ 0.8
Ubr3Q5U430 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 AC147366.1-201ENSMUST00000227671 852 ntBASIC20.05■□□□□ 0.8
Ubr3Q5U430 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ubr3Q5U430 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 AC159295.1-201ENSMUST00000225326 940 ntBASIC20.04■□□□□ 0.8
Ubr3Q5U430 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.04■□□□□ 0.8
Ubr3Q5U430 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ubr3Q5U430 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Gm37171-201ENSMUST00000192636 1185 ntBASIC20.03■□□□□ 0.8
Ubr3Q5U430 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC20.03■□□□□ 0.8
Ubr3Q5U430 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Ubr3Q5U430 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubr3Q5U430 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.03■□□□□ 0.8
Ubr3Q5U430 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC20.03■□□□□ 0.8
Ubr3Q5U430 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.02■□□□□ 0.8
Ubr3Q5U430 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Gm13616-201ENSMUST00000120600 222 ntBASIC20.02■□□□□ 0.8
Ubr3Q5U430 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Gm8396-201ENSMUST00000057361 823 ntBASIC20.02■□□□□ 0.8
Ubr3Q5U430 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ubr3Q5U430 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Ubr3Q5U430 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Ubr3Q5U430 AC132265.1-201ENSMUST00000219233 1665 ntBASIC20.02■□□□□ 0.79
Ubr3Q5U430 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
Ubr3Q5U430 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Gm37153-201ENSMUST00000193637 231 ntBASIC20.01■□□□□ 0.79
Ubr3Q5U430 Gm8969-201ENSMUST00000199694 526 ntBASIC20.01■□□□□ 0.79
Ubr3Q5U430 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Gm8825-201ENSMUST00000182565 998 ntBASIC20.01■□□□□ 0.79
Ubr3Q5U430 Gm44872-201ENSMUST00000207864 420 ntBASIC20.01■□□□□ 0.79
Ubr3Q5U430 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ubr3Q5U430 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC20■□□□□ 0.79
Ubr3Q5U430 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ubr3Q5U430 Wdyhv1-206ENSMUST00000227142 786 ntBASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms