Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Rnf40Q3U319 AC140264.2-202ENSMUST00000218746 817 ntBASIC17.25■□□□□ 0.35
Rnf40Q3U319 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Asic1-205ENSMUST00000228185 1818 ntBASIC17.25■□□□□ 0.35
Rnf40Q3U319 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rnf40Q3U319 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.24■□□□□ 0.35
Rnf40Q3U319 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.24■□□□□ 0.35
Rnf40Q3U319 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.24■□□□□ 0.35
Rnf40Q3U319 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Rnf40Q3U319 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC17.24■□□□□ 0.35
Rnf40Q3U319 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rnf40Q3U319 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.23■□□□□ 0.35
Rnf40Q3U319 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Nespas-201ENSMUST00000143738 1083 ntBASIC17.23■□□□□ 0.35
Rnf40Q3U319 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rnf40Q3U319 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.22■□□□□ 0.35
Rnf40Q3U319 Gm6420-201ENSMUST00000193885 723 ntBASIC17.22■□□□□ 0.35
Rnf40Q3U319 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Rnf40Q3U319 AC154532.1-201ENSMUST00000227860 965 ntBASIC17.22■□□□□ 0.35
Rnf40Q3U319 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rnf40Q3U319 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rnf40Q3U319 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms