Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Zfp264-201ENSMUST00000208656 1563 ntBASIC14.3□□□□□ -0.12
Nkx3-1P97436 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC14.3□□□□□ -0.12
Nkx3-1P97436 AC153794.1-201ENSMUST00000169148 126 ntBASIC14.3□□□□□ -0.12
Nkx3-1P97436 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx3-1P97436 Gm6598-201ENSMUST00000202719 2615 ntBASIC14.29□□□□□ -0.12
Nkx3-1P97436 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.29□□□□□ -0.12
Nkx3-1P97436 Gm12644-201ENSMUST00000119935 606 ntBASIC14.29□□□□□ -0.12
Nkx3-1P97436 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx3-1P97436 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Gm13312-201ENSMUST00000119631 718 ntBASIC14.28□□□□□ -0.12
Nkx3-1P97436 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Rprl3-201ENSMUST00000157400 290 ntBASIC14.28□□□□□ -0.12
Nkx3-1P97436 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.28□□□□□ -0.12
Nkx3-1P97436 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx3-1P97436 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.27□□□□□ -0.12
Nkx3-1P97436 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Nkx3-1P97436 Gm18733-201ENSMUST00000173950 856 ntBASIC14.27□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms