Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Cdh11P55288 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Cdh11P55288 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC15.14■□□□□ 0.01
Cdh11P55288 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Cdh11P55288 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Gm9987-201ENSMUST00000069768 567 ntBASIC15.14■□□□□ 0.01
Cdh11P55288 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.14■□□□□ 0.01
Cdh11P55288 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdh11P55288 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdh11P55288 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC15.13■□□□□ 0.01
Cdh11P55288 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdh11P55288 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdh11P55288 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Cdh11P55288 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Cdh11P55288 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cdh11P55288 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Gm19721-201ENSMUST00000195284 1764 ntBASIC15.13■□□□□ 0.01
Cdh11P55288 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdh11P55288 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdh11P55288 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Gm6433-201ENSMUST00000118634 875 ntBASIC15.12■□□□□ 0.01
Cdh11P55288 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Cdh11P55288 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Cdh11P55288 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.12■□□□□ 0.01
Cdh11P55288 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Cdh11P55288 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cdh11P55288 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Cdh11P55288 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC15.11■□□□□ 0.01
Cdh11P55288 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Gm3375-201ENSMUST00000203929 796 ntBASIC15.11■□□□□ 0.01
Cdh11P55288 AC121577.1-201ENSMUST00000227302 707 ntBASIC15.11■□□□□ 0.01
Cdh11P55288 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Cdh11P55288 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Cdh11P55288 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms