Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Cxcl12P40224 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.09■□□□□ 0.33
Cxcl12P40224 AC174742.1-201ENSMUST00000218272 304 ntBASIC17.09■□□□□ 0.33
Cxcl12P40224 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Cxcl12P40224 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.09■□□□□ 0.33
Cxcl12P40224 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cxcl12P40224 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Cxcl12P40224 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Cxcl12P40224 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cxcl12P40224 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Cxcl12P40224 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cxcl12P40224 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC17.08■□□□□ 0.32
Cxcl12P40224 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC17.08■□□□□ 0.32
Cxcl12P40224 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cxcl12P40224 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cxcl12P40224 Shroom3-211ENSMUST00000225438 5742 ntBASIC17.08■□□□□ 0.32
Cxcl12P40224 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Cxcl12P40224 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Cxcl12P40224 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Cxcl12P40224 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Cxcl12P40224 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.07■□□□□ 0.32
Cxcl12P40224 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.07■□□□□ 0.32
Cxcl12P40224 Chchd1-203ENSMUST00000224633 557 ntBASIC17.07■□□□□ 0.32
Cxcl12P40224 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Cxcl12P40224 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Cxcl12P40224 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.07■□□□□ 0.32
Cxcl12P40224 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.07■□□□□ 0.32
Cxcl12P40224 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.06■□□□□ 0.32
Cxcl12P40224 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC17.06■□□□□ 0.32
Cxcl12P40224 H2af-ps-201ENSMUST00000119066 295 ntBASIC17.06■□□□□ 0.32
Cxcl12P40224 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.06■□□□□ 0.32
Cxcl12P40224 Gm11025-201ENSMUST00000140773 466 ntBASIC17.06■□□□□ 0.32
Cxcl12P40224 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Cxcl12P40224 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.06■□□□□ 0.32
Cxcl12P40224 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Cxcl12P40224 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Cxcl12P40224 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Gm14701-201ENSMUST00000117156 348 ntBASIC17.05■□□□□ 0.32
Cxcl12P40224 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.05■□□□□ 0.32
Cxcl12P40224 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Cxcl12P40224 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Cxcl12P40224 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cxcl12P40224 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cxcl12P40224 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms