Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Gm11860-201ENSMUST00000122346 1010 ntBASIC15.71■□□□□ 0.11
Msx1P13297 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Msx1P13297 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC15.71■□□□□ 0.11
Msx1P13297 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Msx1P13297 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
Msx1P13297 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Msx1P13297 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.11
Msx1P13297 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Msx1P13297 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Msx1P13297 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Msx1P13297 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC15.7■□□□□ 0.1
Msx1P13297 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Msx1P13297 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Msx1P13297 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Msx1P13297 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC15.7■□□□□ 0.1
Msx1P13297 Gm28659-201ENSMUST00000188013 759 ntBASIC15.7■□□□□ 0.1
Msx1P13297 AC164629.2-201ENSMUST00000217916 270 ntBASIC15.7■□□□□ 0.1
Msx1P13297 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Msx1P13297 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Msx1P13297 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Msx1P13297 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC15.69■□□□□ 0.1
Msx1P13297 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Mir770-201ENSMUST00000103252 94 ntBASIC15.69■□□□□ 0.1
Msx1P13297 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Msx1P13297 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Msx1P13297 Gm45328-201ENSMUST00000210942 917 ntBASIC15.69■□□□□ 0.1
Msx1P13297 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
Msx1P13297 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.69■□□□□ 0.1
Msx1P13297 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Msx1P13297 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC15.68■□□□□ 0.1
Msx1P13297 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
Msx1P13297 Gm3272-201ENSMUST00000181181 1229 ntBASIC15.68■□□□□ 0.1
Msx1P13297 Gm34391-201ENSMUST00000203706 907 ntBASIC15.68■□□□□ 0.1
Msx1P13297 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Gm10566-201ENSMUST00000086739 996 ntBASIC15.68■□□□□ 0.1
Msx1P13297 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Msx1P13297 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC15.68■□□□□ 0.1
Msx1P13297 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Msx1P13297 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Msx1P13297 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Msx1P13297 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Msx1P13297 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC15.67■□□□□ 0.1
Msx1P13297 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Gm37722-201ENSMUST00000193757 208 ntBASIC15.67■□□□□ 0.1
Msx1P13297 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC15.67■□□□□ 0.1
Msx1P13297 Gm43371-201ENSMUST00000202838 1031 ntBASIC15.67■□□□□ 0.1
Msx1P13297 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Msx1P13297 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms