Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Col1a1P11087 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.37■□□□□ 0.69
Col1a1P11087 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Col1a1P11087 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC19.36■□□□□ 0.69
Col1a1P11087 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Col1a1P11087 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC19.36■□□□□ 0.69
Col1a1P11087 Ndufaf2-202ENSMUST00000223734 556 ntBASIC19.36■□□□□ 0.69
Col1a1P11087 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC19.36■□□□□ 0.69
Col1a1P11087 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.36■□□□□ 0.69
Col1a1P11087 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC19.36■□□□□ 0.69
Col1a1P11087 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col1a1P11087 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC19.35■□□□□ 0.69
Col1a1P11087 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.35■□□□□ 0.69
Col1a1P11087 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC19.35■□□□□ 0.69
Col1a1P11087 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC19.35■□□□□ 0.69
Col1a1P11087 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC19.35■□□□□ 0.69
Col1a1P11087 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Col1a1P11087 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col1a1P11087 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC19.34■□□□□ 0.69
Col1a1P11087 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Col1a1P11087 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.34■□□□□ 0.69
Col1a1P11087 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC19.34■□□□□ 0.69
Col1a1P11087 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
Col1a1P11087 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.34■□□□□ 0.69
Col1a1P11087 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.34■□□□□ 0.69
Col1a1P11087 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col1a1P11087 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.33■□□□□ 0.69
Col1a1P11087 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col1a1P11087 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col1a1P11087 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col1a1P11087 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col1a1P11087 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col1a1P11087 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Col1a1P11087 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col1a1P11087 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Col1a1P11087 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC19.33■□□□□ 0.68
Col1a1P11087 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC19.33■□□□□ 0.68
Col1a1P11087 Auts2-212ENSMUST00000178555 309 ntBASIC19.33■□□□□ 0.68
Col1a1P11087 Gm10576-201ENSMUST00000191927 825 ntBASIC19.33■□□□□ 0.68
Col1a1P11087 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC19.33■□□□□ 0.68
Col1a1P11087 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col1a1P11087 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC19.33■□□□□ 0.68
Col1a1P11087 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col1a1P11087 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col1a1P11087 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col1a1P11087 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col1a1P11087 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.32■□□□□ 0.68
Col1a1P11087 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.32■□□□□ 0.68
Col1a1P11087 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC19.32■□□□□ 0.68
Col1a1P11087 Gm11764-201ENSMUST00000120221 623 ntBASIC19.32■□□□□ 0.68
Col1a1P11087 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC19.32■□□□□ 0.68
Col1a1P11087 Mir3113-201ENSMUST00000175478 76 ntBASIC19.32■□□□□ 0.68
Col1a1P11087 Mir8117-201ENSMUST00000184773 107 ntBASIC19.32■□□□□ 0.68
Col1a1P11087 AC151286.1-201ENSMUST00000198489 145 ntBASIC19.32■□□□□ 0.68
Col1a1P11087 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC19.32■□□□□ 0.68
Col1a1P11087 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Col1a1P11087 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Col1a1P11087 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.32■□□□□ 0.68
Col1a1P11087 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col1a1P11087 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Col1a1P11087 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 32.6 ms