Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC15.03■□□□□ -0
Lmx1bO88609 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC15.03■□□□□ -0
Lmx1bO88609 AC122351.1-201ENSMUST00000220467 126 ntBASIC15.03■□□□□ -0
Lmx1bO88609 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Lmx1bO88609 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Lmx1bO88609 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lmx1bO88609 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Lmx1bO88609 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.02■□□□□ -0
Lmx1bO88609 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lmx1bO88609 Phf7-203ENSMUST00000226565 1971 ntBASIC15.02■□□□□ -0
Lmx1bO88609 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lmx1bO88609 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Lmx1bO88609 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC15.02■□□□□ -0
Lmx1bO88609 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Lmx1bO88609 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC15.02■□□□□ -0
Lmx1bO88609 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lmx1bO88609 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lmx1bO88609 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
Lmx1bO88609 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lmx1bO88609 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lmx1bO88609 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Lmx1bO88609 Cxcl14-202ENSMUST00000224801 1467 ntBASIC15.01□□□□□ -0.01
Lmx1bO88609 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Lmx1bO88609 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Lmx1bO88609 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Gm11336-201ENSMUST00000118168 334 ntBASIC15.01□□□□□ -0.01
Lmx1bO88609 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Gm28033-201ENSMUST00000184224 96 ntBASIC15.01□□□□□ -0.01
Lmx1bO88609 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC15.01□□□□□ -0.01
Lmx1bO88609 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Lmx1bO88609 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
Lmx1bO88609 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Lmx1bO88609 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC15□□□□□ -0.01
Lmx1bO88609 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC15□□□□□ -0.01
Lmx1bO88609 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Lmx1bO88609 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
Lmx1bO88609 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Gm13186-201ENSMUST00000118031 316 ntBASIC14.99□□□□□ -0.01
Lmx1bO88609 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Gm27742-201ENSMUST00000184667 60 ntBASIC14.99□□□□□ -0.01
Lmx1bO88609 AC159205.3-201ENSMUST00000224614 874 ntBASIC14.99□□□□□ -0.01
Lmx1bO88609 Otx2os1-206ENSMUST00000228153 787 ntBASIC14.99□□□□□ -0.01
Lmx1bO88609 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC14.99□□□□□ -0.01
Lmx1bO88609 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC14.99□□□□□ -0.01
Lmx1bO88609 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Lmx1bO88609 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC14.98□□□□□ -0.01
Lmx1bO88609 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Lmx1bO88609 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC14.98□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms