Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ube4aE9Q735 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ube4aE9Q735 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ube4aE9Q735 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ube4aE9Q735 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ube4aE9Q735 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ube4aE9Q735 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Ube4aE9Q735 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
Ube4aE9Q735 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Ube4aE9Q735 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Ube4aE9Q735 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
Ube4aE9Q735 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC19.89■□□□□ 0.77
Ube4aE9Q735 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.89■□□□□ 0.77
Ube4aE9Q735 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ube4aE9Q735 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Gm2651-201ENSMUST00000203560 838 ntBASIC19.88■□□□□ 0.77
Ube4aE9Q735 Rbfox2-207ENSMUST00000227533 1041 ntBASIC19.88■□□□□ 0.77
Ube4aE9Q735 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ube4aE9Q735 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.87■□□□□ 0.77
Ube4aE9Q735 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ube4aE9Q735 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Gm18856-201ENSMUST00000178096 1374 ntBASIC19.86■□□□□ 0.77
Ube4aE9Q735 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ube4aE9Q735 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Gm37811-201ENSMUST00000192416 2601 ntBASIC19.85■□□□□ 0.77
Ube4aE9Q735 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ube4aE9Q735 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Ube4aE9Q735 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC19.84■□□□□ 0.77
Ube4aE9Q735 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ube4aE9Q735 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
Ube4aE9Q735 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Ube4aE9Q735 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms