Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Gm26524-201ENSMUST00000192339 390 ntBASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Trav11A0A0B4J1J9 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Trav11A0A0B4J1J9 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Gm38042-201ENSMUST00000191614 5208 ntBASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Trav11A0A0B4J1J9 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Trav11A0A0B4J1J9 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms