Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC6.14□□□□□ -1.43
HMGB1P09429 MIR4302-201ENST00000638058 60 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.14□□□□□ -1.43
HMGB1P09429 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
HMGB1P09429 AC011755.1-201ENST00000623763 2049 ntBASIC6.14□□□□□ -1.43
HMGB1P09429 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.14□□□□□ -1.43
HMGB1P09429 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HMGB1P09429 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
HMGB1P09429 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HMGB1P09429 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.14□□□□□ -1.43
HMGB1P09429 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC6.14□□□□□ -1.43
HMGB1P09429 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC6.14□□□□□ -1.43
HMGB1P09429 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
HMGB1P09429 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 AC104623.2-202ENST00000623477 4002 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 RN7SKP162-201ENST00000363605 345 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 MIR217-201ENST00000384817 110 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
HMGB1P09429 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
HMGB1P09429 RPS24P12-201ENST00000402084 394 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 MTCO3P1-205ENST00000422088 832 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 Z93242.1-201ENST00000427102 353 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC007559.1-201ENST00000428736 355 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC6.13□□□□□ -1.43
HMGB1P09429 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC6.13□□□□□ -1.43
HMGB1P09429 CYCSP24-201ENST00000445119 316 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC108161.1-201ENST00000461060 402 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC079203.1-201ENST00000487972 404 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 ENPP7P11-201ENST00000505915 627 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 AC093752.1-206ENST00000511823 336 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC6.13□□□□□ -1.43
HMGB1P09429 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.13□□□□□ -1.43
HMGB1P09429 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC6.13□□□□□ -1.43
HMGB1P09429 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.13□□□□□ -1.43
HMGB1P09429 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.13□□□□□ -1.43
HMGB1P09429 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 IMMP1LP3-201ENST00000604197 224 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC098935.2-201ENST00000604222 466 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC6.13□□□□□ -1.43
HMGB1P09429 AC092954.1-201ENST00000609121 445 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC116651.1-201ENST00000609724 556 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC090116.1-201ENST00000615679 446 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 AC108359.1-201ENST00000616451 1211 ntBASIC6.13□□□□□ -1.43
HMGB1P09429 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.13□□□□□ -1.43
HMGB1P09429 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC6.13□□□□□ -1.43
HMGB1P09429 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
HMGB1P09429 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
HMGB1P09429 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 FTX-210ENST00000603037 8347 ntTSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 RNU6-492P-201ENST00000363035 104 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 EIF5P1-201ENST00000400019 1231 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AL121972.1-201ENST00000402023 252 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC6.12□□□□□ -1.43
HMGB1P09429 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 MTND2P16-201ENST00000419987 799 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 EI24P4-201ENST00000423683 1078 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.12□□□□□ -1.43
HMGB1P09429 MTCO1P3-201ENST00000429327 192 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC068287.1-201ENST00000430283 295 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 MTCO3P2-201ENST00000457365 171 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC010307.1-201ENST00000467206 836 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC090114.3-201ENST00000479267 829 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 EIF3LP3-201ENST00000495197 822 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC024558.1-201ENST00000505008 528 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC106872.4-201ENST00000510050 523 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 MTCO3P44-201ENST00000510977 541 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC6.12□□□□□ -1.43
HMGB1P09429 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC6.12□□□□□ -1.43
HMGB1P09429 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 DEFB130C-202ENST00000530001 230 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 ZNF705CP-201ENST00000530515 889 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.12□□□□□ -1.43
HMGB1P09429 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC6.12□□□□□ -1.43
HMGB1P09429 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
HMGB1P09429 AC006270.2-201ENST00000578523 652 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC090616.5-202ENST00000582111 297 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AC097504.2-201ENST00000608088 454 ntBASIC6.12□□□□□ -1.43
HMGB1P09429 AF001550.2-201ENST00000636643 217 ntBASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms